PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G046200.1.p
Common NameGLYMA_09G046200, LOC102663543
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 118aa    MW: 13216.9 Da    PI: 5.2887
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G046200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB154.22.3e-4817100285
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                          +eqdr+lPianv+r+mk++lP+nakisk+aket+qecvsefisfvtseas+kc++e+rkt+ngdd++walatlGf+dy+ep++ 
  Glyma.09G046200.1.p  17 KEQDRLLPIANVGRLMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRR 100
                          89*******************************************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.1E-4611103IPR009072Histone-fold
SuperFamilySSF471134.81E-3519110IPR009072Histone-fold
PfamPF008081.3E-272286IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.1E-155068No hitNo description
PROSITE patternPS0068505369IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.1E-156987No hitNo description
PRINTSPR006155.1E-1588106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MEDSIGGSSS NDNNIIKEQD RLLPIANVGR LMKQILPQNA KISKEAKETM QECVSEFISF  60
VTSEASEKCR KERRKTVNGD DICWALATLG FDDYAEPMRR KSRTKIQEAS TNQNDLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-411699184Transcription factor HapC (Eurofung)
4g92_B4e-411699184Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006586933.18e-83PREDICTED: nuclear transcription factor Y subunit B-5-like isoform X2
SwissprotO822482e-50NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLK7LBT78e-83K7LBT7_SOYBN; Uncharacterized protein
STRINGGLYMA09G05150.22e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.15e-51nuclear factor Y, subunit B5